Protein docking refinement by convex underestimation in the low-dimensional subspace of encounter complexes
Author:
Publisher
Springer Science and Business Media LLC
Subject
Multidisciplinary
Link
http://www.nature.com/articles/s41598-018-23982-3.pdf
Reference48 articles.
1. Huang, Y., Liu, S., Guo, D., Li, L. & Xiao, Y. A novel protocol for three-dimensional structure prediction of rna-protein complexes. Scientific reports 3 (2013).
2. Kozakov, D., Brenke, R., Comeau, S. R. & Vajda, S. PIPER: An FFT-based protein docking program with pairwise potentials. Proteins 65, 392–406 (2006).
3. Heo, L., Lee, H. & Seok, C. Galaxyrefinecomplex: Refinement of protein-protein complex model structures driven by interface repacking. Scientific reports 6 (2016).
4. Gray, J. J. et al. Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. J. Molecular Biology 331, 281–299 (2003).
5. Mamonov, A. B. et al. Focused grid-based resampling for protein docking and mapping. Journal of Computational Chemistry 37, 961–970, https://doi.org/10.1002/jcc.24273 (2016).
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