Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data-Reference-Cited by-同舟云学术

Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data

Published:2018-03-09 Issue:1 Volume:8 Page:
ISSN:2045-2322
Container-title:Scientific Reports
language:en
Short-container-title:Sci Rep

Author:

Benoit-Pilven Clara,Marchet Camille,Chautard Emilie,Lima Leandro,Lambert Marie-Pierre,Sacomoto Gustavo,Rey Amandine,Cologne Audric,Terrone Sophie,Dulaurier Louis,Claude Jean-Baptiste,Bourgeois Cyril F.,Auboeuf Didier,Lacroix Vincent

Publisher

Springer Science and Business Media LLC

Subject

Multidisciplinary

Link

http://www.nature.com/articles/s41598-018-21770-7.pdf

Reference38 articles.

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2. Wang, E. T. et al. Alternative isoform regulation in human tissue transcriptomes. Nature 456, 470–476 (2008).

3. Scotti, M. M. & Swanson, M. S. Rna mis-splicing in disease. Nature Reviews Genetics 17, 19–32 (2016).

4. Edery, P. et al. Association of tals developmental disorder with defect in minor splicing component u4atac snrna. Science 332, 240–243 (2011).

5. David, C. J. & Manley, J. L. Alternative pre-mrna splicing regulation in cancer: pathways and programs unhinged. Genes & development 24, 2343–2364 (2010).

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