UROPA: a tool for Universal RObust Peak Annotation
Author:
Publisher
Springer Science and Business Media LLC
Subject
Multidisciplinary
Link
http://www.nature.com/articles/s41598-017-02464-y.pdf
Reference28 articles.
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2. Harmanci, A., Rozowsky, J. & Gerstein, M. MUSIC: identification of enriched regions in ChIP-Seq experiments using a mappability-corrected multiscale signal processing framework. Genome Biol 15, 474, doi: 10.1186/s13059-014-0474-3 (2014).
3. Heinz, S. et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38, 576–589, doi: 10.1016/j.molcel.2010.05.004 (2010).
4. Bhasin, J. M. & Ting, A. H. Goldmine integrates information placing genomic ranges into meaningful biological contexts. Nucleic Acids Res 44, 5550–5556, doi: 10.1093/nar/gkw477 (2016).
5. McLean, C. Y. et al. GREAT improves functional interpretation of cis-regulatory regions. Nat Biotechnol 28, 495–501, doi: 10.1038/nbt.1630 (2010).
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