Author:
Liu Yanjiang,Zhu Xiao,Wu Mingli,Xu Xue,Dai Zhaoxia,Gou Guangqian
Abstract
AbstractChimonobambusa hirtinoda, a threatened species, is only naturally distributed in Doupeng Mountain, Duyun, Guizhou, China. Next-generation sequencing (NGS) is used to obtain the complete chloroplast (cp) genome sequence of C. hirtinoda. The sequence was assembled and analyzed for phylogenetic and evolutionary studies. Additionally, we compared the cp genome of C. hirtinoda with previously published Chimonobambusa species. The cp genome of C. hirtinoda has a total length of 139, 561 bp and 38.90% GC content. This genome included a large single -copy (LSC) region of 83, 166 bp, a small single-copy (SSC) region of 20, 811 bp and a pair of inverted repeats of 21,792 bp each. We discovered 130 genes in the cp genome, including 85 protein-coding genes, 37 tRNA, and 8 rRNA genes. A total of 48 simple sequence repeats (SSRs) were detected. The A/U preference of the third nucleotide in the cp genome of C. hirtinoda was obtained by measuring the codon usage frequency of amino acids. Furthermore, phylogenetic analysis using complete cp sequences and matK gene revealed a genetic relationship within the Chimonobambusa genus. This study reported the chloroplast genome of the C. hirtinoda.
Funder
The key Project of Guizhou Provincial Department of Education
Publisher
Springer Science and Business Media LLC
Reference54 articles.
1. Liu, Y. J. et al. Nutrition components in shoots of different provenance of Chimonobambusa hejiangensis and C. pachystachys. J. Zhejiang For. Sci. Technol. 32(04), 37–42 (2012).
2. Gou, G. Q. et al. Nutrient analysis on bamboo shoots of three species in Chimonobambusa. China Veg. 16, 79–81 (2010).
3. Gao, Q. et al. Nitrogen self-doped activated carbons with narrow pore size distribution from bamboo shoot shells. Colloids Surf. A Physicochem. Eng. Asp. 629, 0927–7757. https://doi.org/10.1016/j.colsurfa.2021.127408 (2021).
4. Zhou, Q. L. Effects of three kinds of economic forests on soil physical and chemical properties in Alpine Region. Tibe J. Agric. Sci. 42, 51–53 (2021).
5. Chen, G. J. et al. Characterization of physicochemical properties and antioxidant activity of polysaccharides from shoot residues of bamboo (Chimonobambusa quadrangularis): Effect of drying procedures. Food Chem. 292, 281–293. https://doi.org/10.1016/j.foodchem.2019.04.060 (2019).
Cited by
3 articles.
订阅此论文施引文献
订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献