RNAseqCNV: analysis of large-scale copy number variations from RNA-seq data

Author:

Bařinka Jan,Hu Zunsong,Wang LuORCID,Wheeler David A.,Rahbarinia Delaram,McLeod Clay,Gu ZhaohuiORCID,Mullighan Charles G.ORCID

Funder

U.S. Department of Health & Human Services | NIH | National Cancer Institute

Leukemia and Lymphoma Society

American Society of Hematology

U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences

Publisher

Springer Science and Business Media LLC

Subject

Oncology,Cancer Research,Hematology

Reference17 articles.

1. Li JF, Dai YT, Lilljebjorn H, Shen SH, Cui BW, Bai L, et al. Transcriptional landscape of B cell precursor acute lymphoblastic leukemia based on an international study of 1223 cases. Proc Natl Acad Sci USA. 2018;115:E11711–E11720. Dec 11

2. Gu Z, Churchman ML, Roberts KG, Moore I, Zhou X, Nakitandwe J, et al. PAX5-driven subtypes of B-progenitor acute lymphoblastic leukemia. Nat Genet. 2019;51:296–307. Jan 14

3. Liu Y, Easton J, Shao Y, Maciaszek J, Wang Z, Wilkinson MR, et al. The genomic landscape of pediatric and young adult T-lineage acute lymphoblastic leukemia. Nature genetics 2017 Jul 03.

4. Talevich E, Shain AH CNVkit-RNA: Copy number inference from RNA-Sequencing data. bioRxiv 2018: 408534.

5. Serin Harmanci A, Harmanci AO, Zhou X. CaSpER identifies and visualizes CNV events by integrative analysis of single-cell or bulk RNA-sequencing data. Nat Commun. 2020;11:89. Jan 3

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