Evaluation of methods for modeling transcription factor sequence specificity-Reference-Cited by-同舟云学术

Evaluation of methods for modeling transcription factor sequence specificity

Published:2013-01-27 Issue:2 Volume:31 Page:126-134
ISSN:1087-0156
Container-title:Nature Biotechnology
language:en
Short-container-title:Nat Biotechnol

Author:

Weirauch Matthew T, ,Cote Atina,Norel Raquel,Annala Matti,Zhao Yue,Riley Todd R,Saez-Rodriguez Julio,Cokelaer Thomas,Vedenko Anastasia,Talukder Shaheynoor,Bussemaker Harmen J,Morris Quaid D,Bulyk Martha L,Stolovitzky Gustavo,Hughes Timothy R

Publisher

Springer Science and Business Media LLC

Subject

Biomedical Engineering,Molecular Medicine,Applied Microbiology and Biotechnology,Bioengineering,Biotechnology

Link

http://www.nature.com/articles/nbt.2486.pdf

Reference56 articles.

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3. Stormo, G.D. Consensus patterns in DNA. Methods Enzymol. 183, 211–221 (1990).

4. Siddharthan, R. Dinucleotide weight matrices for predicting transcription factor binding sites: generalizing the position weight matrix. PLoS ONE 5, e9722 (2010).

5. Zhao, X., Huang, H. & Speed, T.P. Finding short DNA motifs using permuted Markov models. J. Comput. Biol. 12, 894–906 (2005).

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