starTracer is an accelerated approach for precise marker gene identification in single-cell RNA-Seq analysis-Reference-Cited by-同舟云学术

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starTracer is an accelerated approach for precise marker gene identification in single-cell RNA-Seq analysis

Published:2024-09-13 Issue:1 Volume:7 Page:
ISSN:2399-3642
Container-title:Communications Biology
language:en
Short-container-title:Commun Biol

Author:

Zhang Feiyang^ORCID,Huang Kaixin^ORCID,Chen Ruixi,Liu Zechen,Zhao Qiongyi,Hou Shengqun,Ma Wenhao,Li Yanze,Peng Yan,Chen Jincao,Wang Dan Ohtan,Wei Wei^ORCID,Li Xiang^ORCID

Funder

National Science Foundation of China | National Natural Science Foundation of China-Yunnan Joint Fund

Publisher

Springer Science and Business Media LLC

Link

https://www.nature.com/articles/s42003-024-06790-6.pdf

Reference41 articles.

1. Hao, Y. et al. Integrated analysis of multimodal single-cell data. Cell 184, 3573–3587.e29 (2021).

2. Hu, C. et al. CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data. Nucleic Acids Res. 51, D870–D876 (2023).

3. Yao, Z. et al. A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation. Cell 184, 3222–3241.e26 (2021).

4. Stuart, T. et al. Comprehensive integration of single-cell data. Cell 177, 1888–1902.e21 (2019).

5. Wolf, F. A., Angerer, P. & Theis, F. J. SCANPY: large-scale single-cell gene expression data analysis. Genome Biol. 19, 15 (2018).

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