Chemoproteomic profiling unveils binding and functional diversity of endogenous proteins that interact with endogenous triplex DNA-Reference-Cited by-同舟云学术

Chemoproteomic profiling unveils binding and functional diversity of endogenous proteins that interact with endogenous triplex DNA

Published:2024-09-02 Issue: Volume: Page:
ISSN:1755-4330
Container-title:Nature Chemistry
language:en
Short-container-title:Nat. Chem.

Author:

Xu Hongzhan^ORCID,Ye Jing,Zhang Kui-Xing,Hu Qingxi^ORCID,Cui Tongxiao^ORCID,Tong Chong,Wang Mengqi,Geng Huichao,Shui Kun-Ming,Sun Yan,Wang Jian^ORCID,Hou Xiaomeng,Zhang Kai,Xie Ran,Yin Yafei^ORCID,Chen Nan^ORCID,Chen Jia-Yu^ORCID

Funder

National Natural Science Foundation of China

Ministry of Science and Technology of the People's Republic of China

Jiangsu Specially-Appointed Professor Program; AI&AI for Science Project of Nanjing University

Jiangsu Funding Program for Excellent Postdoctoral Talent

Natural Science Foundation of Jiangsu Province

Publisher

Springer Science and Business Media LLC

Link

https://www.nature.com/articles/s41557-024-01609-7.pdf

Reference82 articles.

1. Frank-Kamenetskii, M. D. & Mirkin, S. M. Triplex DNA structures. Annu. Rev. Biochem. 64, 65–95 (1995).

2. Schroth, G. P. & Ho, P. S. Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA. Nucleic Acids Res. 23, 1977–1983 (1995).

3. Ohno, M., Fukagawa, T., Lee, J. S. & Ikemura, T. Triplex-forming DNAs in the human interphase nucleus visualized in situ by polypurine/polypyrimidine DNA probes and antitriplex antibodies. Chromosoma 111, 201–213 (2002).

4. Kouzine, F. et al. Permanganate/S1 nuclease footprinting reveals non-B DNA structures with regulatory potential across a mammalian genome. Cell Syst. 4, 344–356 e347 (2017).

5. Maekawa, K., Yamada, S., Sharma, R., Chaudhuri, J. & Keeney, S. Triple-helix potential of the mouse genome. Proc. Natl Acad. Sci. USA 119, e2203967119 (2022).