Pangenome graph construction from genome alignments with Minigraph-Cactus
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Published:2023-05-10
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ISSN:1087-0156
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Container-title:Nature Biotechnology
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language:en
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Short-container-title:Nat Biotechnol
Author:
Hickey GlennORCID, Monlong Jean, Ebler Jana, Novak Adam M.ORCID, Eizenga Jordan M., Gao Yan, Abel Haley J., Antonacci-Fulton Lucinda L., Asri Mobin, Baid Gunjan, Baker Carl A., Belyaeva Anastasiya, Billis Konstantinos, Bourque Guillaume, Buonaiuto Silvia, Carroll Andrew, Chaisson Mark J. P., Chang Pi-Chuan, Chang Xian H., Cheng Haoyu, Chu Justin, Cody Sarah, Colonna Vincenza, Cook Daniel E., Cook-Deegan Robert M., Cornejo Omar E., Diekhans Mark, Doerr Daniel, Ebert Peter, Ebler Jana, Eichler Evan E., Fairley Susan, Fedrigo Olivier, Felsenfeld Adam L., Feng Xiaowen, Fischer Christian, Flicek Paul, Formenti Giulio, Frankish Adam, Fulton Robert S., Garg Shilpa, Garrison Erik, Garrison Nanibaa’ A., Giron Carlos Garcia, Green Richard E., Groza Cristian, Guarracino Andrea, Haggerty Leanne, Hall Ira M., Harvey William T., Haukness Marina, Haussler David, Heumos Simon, Hoekzema Kendra, Hourlier Thibaut, Howe Kerstin, Jain Miten, Jarvis Erich D., Ji Hanlee P., Kenny Eimear E., Koenig Barbara A., Kolesnikov Alexey, Korbel Jan O., Kordosky Jennifer, Koren Sergey, Lee HoJoon, Lewis Alexandra P., Liao Wen-Wei, Lu Shuangjia, Lu Tsung-Yu, Lucas Julian K., Magalhães Hugo, Marco-Sola Santiago, Marijon Pierre, Markello Charles, Marschall Tobias, Martin Fergal J., McCartney Ann, McDaniel Jennifer, Miga Karen H., Mitchell Matthew W., Mountcastle Jacquelyn, Munson Katherine M., Mwaniki Moses Njagi, Nattestad Maria, Nurk Sergey, Olsen Hugh E., Olson Nathan D., Pesout Trevor, Phillippy Adam M., Popejoy Alice B., Porubsky David, Prins Pjotr, Puiu Daniela, Rautiainen Mikko, Regier Allison A., Rhie Arang, Sacco Samuel, Sanders Ashley D., Schneider Valerie A., Schultz Baergen I., Shafin Kishwar, Sibbesen Jonas A., Sirén Jouni, Smith Michael W., Sofia Heidi J., Tayoun Ahmad N. Abou, Thibaud-Nissen Françoise, Tomlinson Chad, Tricomi Francesca Floriana, Villani Flavia, Vollger Mitchell R., Wagner Justin, Walenz Brian, Wang Ting, Wood Jonathan M. D., Zimin Aleksey V., Zook Justin M., Marschall TobiasORCID, Li HengORCID, Paten BenedictORCID,
Publisher
Springer Science and Business Media LLC
Subject
Biomedical Engineering,Molecular Medicine,Applied Microbiology and Biotechnology,Bioengineering,Biotechnology
Reference58 articles.
1. Eizenga, J. M. et al. Pangenome graphs. Annu. Rev. Genomics Hum. Genet. 21, 139–162 (2020). 2. Miga, K. H. & Wang, T. The need for a human pangenome reference sequence. Annu. Rev. Genomics Hum. Genet. 22, 81–102 (2021). 3. Garrison, E. et al. Variation graph toolkit improves read mapping by representing genetic variation in the reference. Nat. Biotechnol. 36, 875–879 (2018). 4. Abel, H. J. et al. Mapping and characterization of structural variation in 17,795 human genomes. Nature 583, 83–89 (2020). 5. Hickey, G. et al. Genotyping structural variants in pangenome graphs using the vg toolkit. Genome Biol. 21, 35 (2020).
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