Butler enables rapid cloud-based analysis of thousands of human genomes
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Published:2020-02-05
Issue:3
Volume:38
Page:288-292
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ISSN:1087-0156
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Container-title:Nature Biotechnology
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language:en
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Short-container-title:Nat Biotechnol
Author:
Yakneen SergeiORCID, Waszak Sebastian M., Yakneen Sergei, Aminou Brice, Bartolome Javier, Boroevich Keith A., Boyce Rich, Brooks Angela N., Buchanan Alex, Buchhalter Ivo, Butler Adam P., Byrne Niall J., Cafferkey Andy, Campbell Peter J., Chen Zhaohong, Cho Sunghoon, Choi Wan, Clapham Peter, Davis-Dusenbery Brandi N., De La Vega Francisco M., Demeulemeester Jonas, Dow Michelle T., Dursi Lewis Jonathan, Eils Juergen, Eils Roland, Ellrott Kyle, Farcas Claudiu, Favero Francesco, Fayzullaev Nodirjon, Ferretti Vincent, Flicek Paul, Fonseca Nuno A., Gelpi Josep Ll., Getz Gad, Gibson Bob, Grossman Robert L., Harismendy Olivier, Heath Allison P., Heinold Michael C., Hess Julian M., Hofmann Oliver, Hong Jongwhi H., Hudson Thomas J., Hutter Barbara, Hutter Carolyn M., Hübschmann Daniel, Imoto Seiya, Ivkovic Sinisa, Jeon Seung-Hyup, Jiao Wei, Jung Jongsun, Kabbe Rolf, Kahles Andre, Kerssemakers Jules N. A., Kim Hyung-Lae, Kim Hyunghwan, Kim Jihoon, Kim Youngwook, Kleinheinz Kortine, Koscher Michael, Koures Antonios, Kovacevic Milena, Lawerenz Chris, Leshchiner Ignaty, Liu Jia, Livitz Dimitri, Mihaiescu George L., Mijalkovic Sanja, Mijalkovic Lazic Ana, Miyano Satoru, Miyoshi Naoki, Nahal-Bose Hardeep K., Nakagawa Hidewaki, Nastic Mia, Newhouse Steven J., Nicholson Jonathan, O’Connor Brian D., Ocana David, Ohi Kazuhiro, Ohno-Machado Lucila, Omberg Larsson, Ouellette B. F Francis, Paramasivam Nagarajan, Perry Marc D., Pihl Todd D., Prinz Manuel, Puiggròs Montserrat, Radovic Petar, Raine Keiran M., Rheinbay Esther, Rosenberg Mara, Royo Romina, Rätsch Gunnar, Saksena Gordon, Schlesner Matthias, Shorser Solomon I., Short Charles, Sofia Heidi J., Spring Jonathan, Stein Lincoln D., Struck Adam J., Tiao Grace, Tijanic Nebojsa, Torrents David, Van Loo Peter, Vazquez Miguel, Vicente David, Wala Jeremiah A., Wang Zhining, Waszak Sebastian M., Weischenfeldt Joachim, Werner Johannes, Williams Ashley, Woo Youngchoon, Wright Adam J., Xiang Qian, Yang Liming, Yuen Denis, Yung Christina K., Zhang Junjun, Korbel Jan O., Gertz Michael, Korbel Jan O.ORCID, ,
Funder
European Molecular Biology Organization EC | European Research Council European Commission
Publisher
Springer Science and Business Media LLC
Subject
Biomedical Engineering,Molecular Medicine,Applied Microbiology and Biotechnology,Bioengineering,Biotechnology
Reference19 articles.
1. Habermann, N., Mardin, B. R., Yakneen, S. & Korbel, J. O. Using large-scale genome variation cohorts to decipher the molecular mechanism of cancer. C. R. Biol. 339, 308–313 (2016). 2. Di Tommaso, P. et al. Nextflow enables reproducible computational workflows. Nat. Biotechnol. 35, 316–319 (2017). 3. Vivian, J. & Paten, B. Toil enables reproducible, open source, big biomedical data analyses. Nat. Biotechnol. 35, 314–316 (2017). 4. Mashl, R. J. et al. GenomeVIP: a cloud platform for genomic variant discovery and interpretation. Genome Res. 27, 1450–1459 (2017). 5. Stein, L. D., Knoppers, B. M., Campbell, P., Getz, G. & Korbel, J. O. Data analysis: create a cloud commons. Nature 523, 149–151 (2015).
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