KARR-seq maps higher-order RNA structures and RNA–RNA interactions across the transcriptome
Author:
Publisher
Springer Science and Business Media LLC
Subject
Biomedical Engineering,Molecular Medicine,Applied Microbiology and Biotechnology,Bioengineering,Biotechnology
Link
https://www.nature.com/articles/s41587-023-02110-1.pdf
Reference5 articles.
1. Mortimer, S. A., Kidwell, M. A. & Doudna, J. A. Insights into RNA structure and function from genome-wide studies. Nat. Rev. Genet. 15, 469–479 (2014). A review that presents the relationship between RNA structures and functions.
2. Spitale, R. C. & Incarnato, D. Probing the dynamic RNA structurome and its functions. Nat. Rev. Genet. 24, 178–196 (2023). A review that summarizes methods to probe RNA structures and RNA–RNA interactions.
3. Ganser, L. R., Kelly, M. L., Herschlag, D. & Al-Hashimi, H. M. The roles of structural dynamics in the cellular functions of RNAs. Nat. Rev. Mol. Cell Biol. 20, 474–489 (2019). A review that describes the dynamic nature of RNA structures and explains how structure changes enable RNA functionality.
4. Weng, X. et al. Keth-seq for transcriptome-wide RNA structure mapping. Nat. Chem. Biol. 16, 489–492 (2020). This article reports N3-kethoxal for RNA labeling.
5. You, Q. et al. Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution. Nat. Biotechnol. 39, 225–235 (2021). This article reports dendrimer-mediated DNA conformation capture.
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