Reply to: Revisiting the use of structural similarity index in Hi-C
Author:
Funder
RCUK | Medical Research Council
Academy of Medical Sciences
Deutsche Forschungsgemeinschaft
Publisher
Springer Science and Business Media LLC
Subject
Genetics
Link
https://www.nature.com/articles/s41588-023-01595-5.pdf
Reference17 articles.
1. Galan, S. et al. CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction. Nat. Genet. https://doi.org/10.1038/s41588-020-00712-y (2020).
2. Lee, H., Blumberg, B., Lawrence, M. S. & Shioda, T. Revisiting the use of structural similarity index in Hi-C. Nat. Genet. https://doi.org/10.1038/s41588-023-01594-6 (2023).
3. Gunsalus, L. M. et al. Comparing chromatin contact maps at scale: methods and insights. Preprint at bioRxiv https://doi.org/10.1101/2023.04.04.535480 (2023).
4. Díaz, N. et al. Chromatin conformation analysis of primary patient tissue using a low input Hi-C method. Nat. Commun. 9, 4938 (2018).
5. Ing-Simmons, E. et al. Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning. Nat. Genet. 53, 487–499 (2021).
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1. Revisiting the use of structural similarity index in Hi-C;Nature Genetics;2023-12
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