De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing-Reference-Cited by-同舟云学术

De novo assembly and annotation of three Leptosphaeria genomes using Oxford Nanopore MinION sequencing

Published:2018-11-06 Issue:1 Volume:5 Page:
ISSN:2052-4463
Container-title:Scientific Data
language:en
Short-container-title:Sci Data

Author:

Dutreux Fabien,Da Silva Corinne,d’Agata Léo,Couloux Arnaud,Gay Elise J.,Istace Benjamin,Lapalu Nicolas,Lemainque Arnaud,Linglin Juliette,Noel Benjamin,Wincker Patrick,Cruaud Corinne,Rouxel Thierry,Balesdent Marie-Hélène,Aury Jean-Marc^ORCID

Publisher

Springer Science and Business Media LLC

Subject

Library and Information Sciences,Statistics, Probability and Uncertainty,Computer Science Applications,Education,Information Systems,Statistics and Probability

Link

http://www.nature.com/articles/sdata2018235.pdf

Reference35 articles.

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2. Grandaubert, J. et al. Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans Leptosphaeria biglobosa species complex of fungal pathogens. BMC genomics 15, 891, 10.1186/1471-2164-15-891 (2014).

3. Leclair, S., Ansan-Melayah, D., Rouxel, T. & Balesdent, M. Meiotic behaviour of the minichromosome in the phytopathogenic ascomycete Leptosphaeria maculans. Current genetics 30, 541–548 (1996).

4. Parlange, F. et al. Leptosphaeria maculans avirulence gene AvrLm4-7 confers a dual recognition specificity by the Rlm4 and Rlm7 resistance genes of oilseed rape, and circumvents Rlm4-mediated recognition through a single amino acid change. Molecular microbiology 71, 851–863, 10.1111/j.1365-2958.2008.06547.x (2009).

5. Gervais, J. et al. Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape. Molecular plant pathology 18, 1113–1126, 10.1111/mpp.12464 (2017).

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