Sample collection time affects microbiome study results
Author:
Funder
U.S. Department of Veterans Affairs
U.S. Department of Health ; Human Services | National Institutes of Health
Publisher
Springer Science and Business Media LLC
Link
https://www.nature.com/articles/s42255-024-01077-w.pdf
Reference5 articles.
1. Knight, R. et al. Best practices for analysing microbiomes. Nat. Rev. Microbiol. 16, 410–422 (2018). A review that presents best practices for analysing microbiomes.
2. Allaband, C. et al. Microbiome 101: studying, analyzing, and interpreting gut microbiome data for clinicians. Clin. Gastroenterol. Hepatol. 17, 218–230 (2019). A review that discusses the basics of microbiome analyses aimed at clinicians.
3. Zarrinpar, A., Chaix, A., Yooseph, S. & Panda, S. Diet and Feeding pattern affect the diurnal dynamics of the gut microbiome. Cell Metab. 20, 1006–1017 (2014). A paper that reports how mouse diet and feeding patterns affect the gut microbiome and are linked to disease.
4. Reitmeier, S. et al. Arrhythmic gut microbiome signatures predict risk of type 2 diabetes. Cell Host Microbe 28, 258–272.e6 (2020). A paper that reports how human microbiomes can change across the day and how changes in those rhythms can be linked to disease.
5. Allaband, C. et al. Intermittent hypoxia and hypercapnia alter diurnal rhythms of luminal gut microbiome and metabolome. Msystems 6, https://doi.org/10.1128/msystems.00116-21 (2021). A paper that contains the dataset and analysis of our first observation that experimental and control groups varied in their differences throughout the day.
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