BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets
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Published:2023-04-17
Issue:6
Volume:20
Page:824-835
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ISSN:1548-7091
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Container-title:Nature Methods
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language:en
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Short-container-title:Nat Methods
Author:
Manubens-Gil LinusORCID, Zhou Zhi, Chen Hanbo, Ramanathan Arvind, Liu Xiaoxiao, Liu YufengORCID, Bria AlessandroORCID, Gillette Todd, Ruan Zongcai, Yang Jian, Radojević Miroslav, Zhao Ting, Cheng Li, Qu LeiORCID, Liu Siqi, Bouchard Kristofer E., Gu LinORCID, Cai WeidongORCID, Ji ShuiwangORCID, Roysam BadrinathORCID, Wang Ching-WeiORCID, Yu HongchuanORCID, Sironi Amos, Iascone Daniel MaximORCID, Zhou Jie, Bas Erhan, Conde-Sousa Eduardo, Aguiar Paulo, Li XiangORCID, Li Yujie, Nanda Sumit, Wang YuanORCID, Muresan LeilaORCID, Fua Pascal, Ye BingORCID, He Hai-yan, Staiger Jochen F., Peter Manuel, Cox Daniel N.ORCID, Simonneau Michel, Oberlaender Marcel, Jefferis GregoryORCID, Ito Kei, Gonzalez-Bellido Paloma, Kim Jinhyun, Rubel Edwin, Cline Hollis T.ORCID, Zeng HongkuiORCID, Nern AljoschaORCID, Chiang Ann-ShynORCID, Yao Jianhua, Roskams Jane, Livesey Rick, Stevens Janine, Liu Tianming, Dang Chinh, Guo Yike, Zhong Ning, Tourassi GeorgiaORCID, Hill SeanORCID, Hawrylycz MichaelORCID, Koch ChristofORCID, Meijering ErikORCID, Ascoli Giorgio A.ORCID, Peng HanchuanORCID
Publisher
Springer Science and Business Media LLC
Subject
Cell Biology,Molecular Biology,Biochemistry,Biotechnology
Reference94 articles.
1. Meijering, E. Neuron tracing in perspective. Cytometry A 77, 693–704 (2010). 2. Parekh, R. & Ascoli, G. A. Neuronal morphology goes digital: a research hub for cellular and system neuroscience. Neuron 77, 1017–1038 (2013). 3. Capowski, J. J. An automatic neuron reconstruction system. J. Neurosci. Methods 8, 353–364 (1983). 4. Senft, S. L. A brief history of neuronal reconstruction. Neuroinformatics 9, 119–128 (2011). 5. Cai, D., Cohen, K. B., Luo, T., Lichtman, J. W. & Sanes, J. R. Improved tools for the Brainbow toolbox. Nat. Methods 10, 540–547 (2013).
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