scBasset: sequence-based modeling of single-cell ATAC-seq using convolutional neural networks
Author:
Publisher
Springer Science and Business Media LLC
Subject
Cell Biology,Molecular Biology,Biochemistry,Biotechnology
Link
https://www.nature.com/articles/s41592-022-01562-8.pdf
Reference46 articles.
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2. Satpathy, A. T. et al. Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion. Nat. Biotechnol. 37, 925–936 (2019).
3. Miao, Z. et al. Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and renal disease targets. Nat. Commun. 12, 2277 (2021).
4. Cusanovich, D. A. et al. A single-cell atlas of in vivo mammalian chromatin accessibility. Cell 174, 1309–1324 (2018).
5. Bravo González-Blas, C. et al. cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data. Nat. Methods 16, 397–400 (2019).
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