Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision-Reference-Cited by-同舟云学术

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

Published:2023-07-13 Issue:8 Volume:20 Page:1159-1169
ISSN:1548-7091
Container-title:Nature Methods
language:en
Short-container-title:Nat Methods

Author:

Vromman Marieke^ORCID,Anckaert Jasper^ORCID,Bortoluzzi Stefania,Buratin Alessia,Chen Chia-Ying,Chu Qinjie,Chuang Trees-Juen^ORCID,Dehghannasiri Roozbeh^ORCID,Dieterich Christoph^ORCID,Dong Xin,Flicek Paul^ORCID,Gaffo Enrico^ORCID,Gu Wanjun,He Chunjiang^ORCID,Hoffmann Steve,Izuogu Osagie^ORCID,Jackson Michael S.,Jakobi Tobias^ORCID,Lai Eric C.^ORCID,Nuytens Justine^ORCID,Salzman Julia,Santibanez-Koref Mauro,Stadler Peter^ORCID,Thas Olivier^ORCID,Vanden Eynde Eveline^ORCID,Verniers Kimberly,Wen Guoxia,Westholm Jakub^ORCID,Yang Li^ORCID,Ye Chu-Yu^ORCID,Yigit Nurten^ORCID,Yuan Guo-Hua^ORCID,Zhang Jinyang^ORCID,Zhao Fangqing^ORCID,Vandesompele Jo^ORCID,Volders Pieter-Jan^ORCID

Publisher

Springer Science and Business Media LLC

Subject

Cell Biology,Molecular Biology,Biochemistry,Biotechnology

Link

https://www.nature.com/articles/s41592-023-01944-6.pdf

Reference44 articles.

1. Kristensen, L. S. et al. The biogenesis, biology and characterization of circular RNAs. Nat. Rev. Genet. 20, 675–691 (2019).

2. Hulstaert, E. et al. Charting extracellular transcriptomes in the Human Biofluid RNA Atlas. Cell Rep. 33, 108552 (2020).

3. Wang, S. et al. Circular RNAs in body fluids as cancer biomarkers: the new frontier of liquid biopsies. Mol. Cancer 20, 13. (2021).

4. Vromman, M. et al. Validation of circular RNAs using RT-qPCR after effective removal of linear RNAs by ribonuclease R. Curr. Protoc. 1, e181 (2021).

5. Yu, C. Y., Liu, H. J., Hung, L. Y., Kuo, H. C. & Chuang, T. J. Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?. Nucleic Acids Res. 42, 9410–9423 (2014).

Cited by 23 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Circular RNAs from bovine blastocysts can interact with miRNAs/tsRNAs from embryonic extracellular vesicles and regulate hatching;International Journal of Biological Macromolecules;2024-10

2. PlantCircRNA: a comprehensive database for plant circular RNAs;Nucleic Acids Research;2024-08-27

3. Circular RNA in cancer;Nature Reviews Cancer;2024-07-29

4. CircMAN1A2_009 facilitates YBX1 nuclear localization to induce GLO1 activation for cervical adenocarcinoma cell growth;Cancer Science;2024-07-22

5. Collaborative CRISPR‐Cas System‐Enabled Detection of Circulating Circular RNA for Reliable Monitoring of Acute Myocardial Infarction;Small;2024-07-18