ReDU: a framework to find and reanalyze public mass spectrometry data
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Published:2020-08-17
Issue:9
Volume:17
Page:901-904
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ISSN:1548-7091
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Container-title:Nature Methods
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language:en
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Short-container-title:Nat Methods
Author:
Jarmusch Alan K.ORCID, Wang MingxunORCID, Aceves Christine M., Advani Rohit S.ORCID, Aguirre Shaden, Aksenov Alexander A.ORCID, Aleti Gajender, Aron Allegra T., Bauermeister Anelize, Bolleddu Sanjana, Bouslimani Amina, Caraballo Rodriguez Andres Mauricio, Chaar Rama, Coras Roxana, Elijah Emmanuel O., Ernst Madeleine, Gauglitz Julia M., Gentry Emily C., Husband Makhai, Jarmusch Scott A., Jones Kenneth L., Kamenik ZdenekORCID, Le Gouellec AudreyORCID, Lu Aileen, McCall Laura-Isobel, McPhail Kerry L.ORCID, Meehan Michael J., Melnik Alexey V., Menezes Riya C., Montoya Giraldo Yessica Alejandra, Nguyen Ngoc Hung, Nothias Louis FelixORCID, Nothias-Esposito Mélissa, Panitchpakdi Morgan, Petras DanielORCID, Quinn Robert A.ORCID, Sikora Nicole, van der Hooft Justin J. J.ORCID, Vargas Fernando, Vrbanac Alison, Weldon Kelly C.ORCID, Knight RobORCID, Bandeira NunoORCID, Dorrestein Pieter C.ORCID
Funder
National Science Foundation U.S. Department of Health & Human Services | National Institutes of Health United States Department of Defense | United States Navy | Office of Naval Research University of California, San Diego Center for Microbiome Innovation SEED grant American Society for Mass Spectrometry
Publisher
Springer Science and Business Media LLC
Subject
Cell Biology,Molecular Biology,Biochemistry,Biotechnology
Reference19 articles.
1. Wang, M. et al. Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. Nat. Biotechnol. 34, 828–837 (2016). 2. Haug, K. et al. MetaboLights: a resource evolving in response to the needs of its scientific community. Nucleic Acids Res. 48, D440–D444 (2020). 3. Sud, M. et al. Metabolomics Workbench: an international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools. Nucleic Acids Res. 44, D463–D470 (2016). 4. Federhen, S. The NCBI Taxonomy database. Nucleic Acids Res. 40, D136–D143 (2012). 5. Mungall, C. J., Torniai, C., Gkoutos, G. V., Lewis, S. E. & Haendel, M. A. Uberon, an integrative multi-species anatomy ontology. Genome Biol. 13, R5 (2012).
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