TREX identifies region-specific protein interactors of RNA molecules
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Publisher
Springer Science and Business Media LLC
Link
https://www.nature.com/articles/s41592-024-02182-0.pdf
Reference5 articles.
1. Hafner, M. et al. CLIP and complementary methods. Nat. Rev. Methods Primers 1, 20 (2021). A review article that presents protein-centric methods used for probing RNA–protein interactions.
2. McHugh, C. A. & Guttman, M. RAP-MS: a method to identify proteins that interact directly with a specific RNA molecule in cells. Methods Mol. Biol. 1649, 473–488 (2018). An article that describes RAP-MS, an RNA-centric approach for identifying protein interactors of selected RNA targets.
3. Giambruno, R. & Nicassio, F. Proximity-dependent biotinylation technologies for mapping RNA-protein interactions in live cells. Front. Mol. Biosci. 9, 1062448 (2022). A review article detailing approaches for identifying protein interactors in proximity with RNA targets.
4. Ramanathan, M., Porter, D. F. & Khavari, P. A. Methods to study RNA–protein interactions. Nat. Methods 16, 225–234 (2019). A review article that compares the existing RNA-centric methods used for studying RNA–protein interactions.
5. Smith, T. et al. Organic phase separation opens up new opportunities to interrogate the RNA-binding proteome. Curr. Opin. Chem. Biol. 54, 70–75 (2020). A review article that presents organic phase separation-based methods used for studying RNA–protein interactions.
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