Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd
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Published:2016-09-26
Issue:1
Volume:7
Page:
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ISSN:2041-1723
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Container-title:Nature Communications
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language:en
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Short-container-title:Nat Commun
Author:
Wang ZichenORCID, Monteiro Caroline D., Jagodnik Kathleen M., Fernandez Nicolas F., Gundersen Gregory W., Rouillard Andrew D., Jenkins Sherry L., Feldmann Axel S., Hu Kevin S., McDermott Michael G., Duan Qiaonan, Clark Neil R., Jones Matthew R., Kou Yan, Goff Troy, Woodland Holly, Amaral Fabio M R., Szeto Gregory L.ORCID, Fuchs OliverORCID, Schüssler-Fiorenza Rose Sophia M., Sharma Shvetank, Schwartz Uwe, Bausela Xabier Bengoetxea, Szymkiewicz MaciejORCID, Maroulis Vasileios, Salykin Anton, Barra Carolina M., Kruth Candice D., Bongio Nicholas J., Mathur Vaibhav, Todoric Radmila D, Rubin Udi E., Malatras Apostolos, Fulp Carl T., Galindo John A., Motiejunaite Ruta, Jüschke Christoph, Dishuck Philip C.ORCID, Lahl Katharina, Jafari Mohieddin, Aibar SaraORCID, Zaravinos ApostolosORCID, Steenhuizen Linda H., Allison Lindsey R.ORCID, Gamallo Pablo, de Andres Segura Fernando, Dae Devlin Tyler, Pérez-García Vicente, Ma’ayan Avi
Publisher
Springer Science and Business Media LLC
Subject
General Physics and Astronomy,General Biochemistry, Genetics and Molecular Biology,General Chemistry
Reference78 articles.
1. Barrett, T. et al. NCBI GEO: archive for functional genomics data sets—update. Nucleic Acids Res. 41, D991–D995 (2013). 2. Rustici, G. et al. ArrayExpress update—trends in database growth and links to data analysis tools. Nucleic Acids Res. 41, D987–D990 (2013). 3. Chang, J. et al. SIGNATURE: A workbench for gene expression signature analysis. BMC Bioinformatics 12, 443 (2011). 4. Williams, G. A searchable cross-platform gene expression database reveals connections between drug treatments and disease. BMC Genom. 13, 12 (2012). 5. Fujibuchi, W., Kiseleva, L., Taniguchi, T., Harada, H. & Horton, P. CellMontage: similar expression profile search server. Bioinformatics 23, 3103–3104 (2007).
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