Protein Identification Using Customized Protein Sequence Databases Derived from RNA-Seq Data-Reference-Cited by-同舟云学术

Protein Identification Using Customized Protein Sequence Databases Derived from RNA-Seq Data

Published:2011-12-14 Issue:2 Volume:11 Page:1009-1017
ISSN:1535-3893
Container-title:Journal of Proteome Research
language:en
Short-container-title:J. Proteome Res.

Author:

Wang Xiaojing¹,Slebos Robbert J. C.¹,Wang Dong¹,Halvey Patrick J.¹,Tabb David L.¹,Liebler Daniel C.¹,Zhang Bing¹

Affiliation:

1. Department of Biomedical Informatics, ‡Vanderbilt-Ingram Cancer Center, §Jim Ayers Institute for Precancer Detection and Diagnosis, ∥Department of Cancer Biology, and ⊥Department of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, United States

Publisher

American Chemical Society (ACS)

Subject

General Chemistry,Biochemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/pr200766z

Reference47 articles.

1. Applying mass spectrometry-based proteomics to genetics, genomics and network biology

2. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

3. Probability-based protein identification by searching sequence databases using mass spectrometry data

4. TANDEM: matching proteins with tandem mass spectra

5. MyriMatch: Highly Accurate Tandem Mass Spectral Peptide Identification by Multivariate Hypergeometric Analysis

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