Molecular Dynamics Simulations of the c-kit1 Promoter G-Quadruplex: Importance of Electronic Polarization on Stability and Cooperative Ion Binding-Reference-Cited by-同舟云学术

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Molecular Dynamics Simulations of the c-kit1 Promoter G-Quadruplex: Importance of Electronic Polarization on Stability and Cooperative Ion Binding

Published:2018-12-07 Issue:1 Volume:123 Page:148-159
ISSN:1520-6106
Container-title:The Journal of Physical Chemistry B
language:en
Short-container-title:J. Phys. Chem. B

Author:

Salsbury Alexa M.,Lemkul Justin A.^ORCID

Funder

National Institute of Food and Agriculture

College of Agriculture and Life Sciences

Office of the Provost, Virginia Polytechnic Institute and State University

Department of Biochemistry, Virginia Polytechnic Institute and State University

Publisher

American Chemical Society (ACS)

Subject

Materials Chemistry,Surfaces, Coatings and Films,Physical and Theoretical Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jpcb.8b11026

Reference89 articles.

1. Transcriptional control by G-quadruplexes: In vivo roles and perspectives for specific intervention

2. G-quadruplexes and their regulatory roles in biology

3. G-quadruplexes as novel cis-elements controlling transcription during embryonic development

4. 8-Oxo-7,8-dihydroguanine in the Context of a Gene Promoter G-Quadruplex Is an On–Off Switch for Transcription

5. DNA G-quadruplex and its potential as anticancer drug target

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1. AMOEBA Polarizable Molecular Dynamics Simulations of Guanine Quadruplexes: from the c-Kit Proto-oncogene to HIV-1;2024-08-29

2. Base pair dynamics, electrostatics, and thermodynamics at the LTR-III quadruplex:duplex junction;Biophysical Journal;2024-05

3. Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations;Journal of Chemical Information and Modeling;2024-04-17

4. Molecular dynamics simulations reveal the parallel stranded d(GGGA)3GGG DNA quadruplex folds via multiple paths from a coil-like ensemble;International Journal of Biological Macromolecules;2024-03

5. Mechanical stability and unfolding pathways of parallel tetrameric G-quadruplexes probed by pulling simulations;2024-01-28

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