DCA-MOL: A PyMOL Plugin To Analyze Direct Evolutionary Couplings-Reference-Cited by-同舟云学术

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DCA-MOL: A PyMOL Plugin To Analyze Direct Evolutionary Couplings

Published:2019-01-11 Issue:2 Volume:59 Page:625-629
ISSN:1549-9596
Container-title:Journal of Chemical Information and Modeling
language:en
Short-container-title:J. Chem. Inf. Model.

Author:

Jarmolinska Aleksandra I.¹²^ORCID,Zhou Qin³,Sulkowska Joanna I.¹⁴,Morcos Faruck³⁵

Affiliation:

1. Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097, Warsaw, Poland

2. College of Inter-Faculty Individual Studies in Mathematics and Natural Sciences, Banacha 2c, 02-097 Warsaw, Poland

3. Department of Biological Sciences, University of Texas at Dallas, Richardson, Texas 75080, United States

4. Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland

5. Center for Systems Biology, University of Texas at Dallas, Richardson, Texas 75080, United States

Funder

Narodowe Centrum Nauki

European Molecular Biology Organization

Publisher

American Chemical Society (ACS)

Subject

Library and Information Sciences,Computer Science Applications,General Chemical Engineering,General Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.8b00690

Reference28 articles.

1. Direct-coupling analysis of residue coevolution captures native contacts across many protein families

2. Identification of direct residue contacts in protein-protein interaction by message passing

3. Correlation of co-ordinated amino acid substitutions with function in viruses related to tobacco mosaic virus

4. Correlated mutations and residue contacts in proteins

5. Livesay, D. R.; Kreth, K. E.; Fodor, A. A. Allostery; Springer, 2012; pp 385–398.

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3. A Machine-Learning Approach to Developing a Predictive Signature Based on Transcriptome Profiling of Ground-Glass Opacities for Accurate Classification and Exploring the Immune Microenvironment of Early-Stage LUAD;Frontiers in Immunology;2022-05-26

4. Expanding Direct Coupling Analysis to Identify Heterodimeric Interfaces from Limited Protein Sequence Data;The Journal of Physical Chemistry B;2021-10-07

5. PyVibMS: a PyMOL plugin for visualizing vibrations in molecules and solids;Journal of Molecular Modeling;2020-09-28

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