Characterizing the Folding Transition-State Ensembles in the Energy Landscape of an RNA Tetraloop-Reference-Cited by-同舟云学术

Characterizing the Folding Transition-State Ensembles in the Energy Landscape of an RNA Tetraloop

Published:2023-08-22 Issue:17 Volume:63 Page:5641-5649
ISSN:1549-9596
Container-title:Journal of Chemical Information and Modeling
language:en
Short-container-title:J. Chem. Inf. Model.

Author:

Viegas Rafael G.¹²^ORCID,Sanches Murilo N.²^ORCID,Chen Alan A.³^ORCID,Paulovich Fernando V.⁴,Garcia Angel E.⁵⁶^ORCID,Leite Vitor B. P.²^ORCID

Affiliation:

1. Federal Institute of Education, Science and Technology of São Paulo (IFSP), Catanduva, São Paulo 15.808-305, Brazil

2. Department of Physics, Institute of Biosciences, Humanities and Exact Sciences, São Paulo State University (UNESP), São José do Rio Preto, São Paulo 15054-000, Brazil

3. Department of Chemistry and the RNA Institute, University at Albany, Albany, New York 12222, United States

4. Department of Mathematics and Computer Science, Eindhoven University of Technology, P.O. Box 513, Eindhoven 5600 MB, the Netherlands

5. Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States

6. Physics Division, National Science Foundation, 2415 Eisenhower Ave, Alexandria, Virginia 22314, United States

Funder

Division of Molecular and Cellular Biosciences

Conselho Nacional de Desenvolvimento Cient?fico e Tecnol?gico

Funda??o de Amparo ? Pesquisa do Estado de S?o Paulo

Publisher

American Chemical Society (ACS)

Subject

Library and Information Sciences,Computer Science Applications,General Chemical Engineering,General Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.3c00426

Reference42 articles.

1. Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops".

2. RNA Tetraloop Folding Reveals Tension between Backbone Restraints and Molecular Interactions

3. How RNA folds

4. Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways

5. Reduced Model Captures Mg2+-RNA Interaction Free Energy of Riboswitches

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