Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19

Author:

Acharya A.1ORCID,Agarwal R.23ORCID,Baker M. B.4,Baudry J.5ORCID,Bhowmik D.6ORCID,Boehm S.4,Byler K. G.5,Chen S. Y.7,Coates L.8ORCID,Cooper C. J.23ORCID,Demerdash O.9,Daidone I.10ORCID,Eblen J. D.211,Ellingson S.12,Forli S.13ORCID,Glaser J.14,Gumbart J. C.1ORCID,Gunnels J.15,Hernandez O.4,Irle S.61617ORCID,Kneller D. W.8,Kovalevsky A.8ORCID,Larkin J.18,Lawrence T. J.9,LeGrand S.18,Liu S.-H.211ORCID,Mitchell J.C.9,Park G.7,Parks J.M.23ORCID,Pavlova A.1,Petridis L.211ORCID,Poole D.18,Pouchard L.7,Ramanathan A.19,Rogers D. M.14ORCID,Santos-Martins D.13,Scheinberg A.20,Sedova A.9ORCID,Shen Y.23,Smith J. C.211ORCID,Smith M. D.211ORCID,Soto C.7,Tsaris A.14,Thavappiragasam M.9,Tillack A. F.13,Vermaas J. V.14ORCID,Vuong V. Q.61617,Yin J.14,Yoo S.7,Zahran M.21,Zanetti-Polzi L.22ORCID

Affiliation:

1. School of Physics, Georgia Institute of Technology, Atlanta, Georgia 30332, United States

2. UT/ORNL Center for Molecular Biophysics, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States

3. Graduate School of Genome Science and Technology, University of Tennessee, Knoxville, Tennessee 37996, United States

4. Computer Science and Mathematics Division, Oak Ridge National Lab, Oak Ridge, Tennessee 37830, United States

5. The University of Alabama in Huntsville, Department of Biological Sciences. 301 Sparkman Drive, Huntsville, Alabama 35899, United States

6. Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States

7. Computational Science Initiative, Brookhaven National Laboratory, Upton, New York 11973, United States

8. Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States

9. Biosciences Division, Oak Ridge National Lab, Oak Ridge, Tennessee 37830, United States

10. Department of Physical and Chemical Sciences, University of L’Aquila, I-67010 L’Aquila, Italy

11. The University of Tennessee, Knoxville. Department of Biochemistry & Cellular and Molecular Biology, 309 Ken and Blaire Mossman Bldg. 1311 Cumberland Avenue, Knoxville, Tennessee 37996, United States

12. University of Kentucky, Division of Biomedical Informatics, College of Medicine, UK Medical Center MN 150, Lexington Kentucky 40536, United States

13. Scripps Research, La Jolla, California 92037, United States

14. National Center for Computational Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States

15. HPC Engineering, Amazon Web Services, Seattle, Washington 98121, United States

16. Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States

17. Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee, Knoxville, Tennessee 37996, United States

18. NVIDIA Corporation, Santa Clara, California 95051, United States

19. Data Science and Learning Division, Argonne National Lab, Lemont, Illinois 60439, United States

20. Jubilee Development, Cambridge Massachusetts 02139, United States

21. Department of Biological Sciences, New York City College of Technology, The City University of New York (CUNY), Brooklyn, New York 11201, United States

22. CNR Institute of Nanoscience, I-41125 Modena, Italy

Funder

National Institute of Allergy and Infectious Diseases

National Science Foundation

Publisher

American Chemical Society (ACS)

Subject

Library and Information Sciences,Computer Science Applications,General Chemical Engineering,General Chemistry

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