Observing Noncovalent Interactions in Experimental Electron Density for Macromolecular Systems: A Novel Perspective for Protein–Ligand Interaction Research-Reference-Cited by-同舟云学术

Observing Noncovalent Interactions in Experimental Electron Density for Macromolecular Systems: A Novel Perspective for Protein–Ligand Interaction Research

Published:2022-03-29 Issue:7 Volume:62 Page:1734-1743
ISSN:1549-9596
Container-title:Journal of Chemical Information and Modeling
language:en
Short-container-title:J. Chem. Inf. Model.

Author:

Ding Kang¹,Yin Shiqiu¹,Li Zhongwei¹,Jiang Shiju¹,Yang Yang¹,Zhou Wenbiao¹,Zhang Yingsheng¹,Huang Bo¹^ORCID

Affiliation:

1. Beijing StoneWise Technology Co Ltd., Haidian Street #15, Haidian District, Beijing 100080, China

Funder

Beijing Municipal Science and Technology Commission

Publisher

American Chemical Society (ACS)

Subject

Library and Information Sciences,Computer Science Applications,General Chemical Engineering,General Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.1c01406

Reference36 articles.

1. PLIC: protein–ligand interaction clusters

2. GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns

3. PLI: a web-based tool for the comparison of protein-ligand interactions observed on PDB structures

4. Protein-ligand interaction databases: advanced tools to mine activity data and interactions on a structural level

5. Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs

Cited by 14 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Vacancy defect in boron nitride nanotube improves CO2 uptake from the gaseous mixture;Materials Science in Semiconductor Processing;2024-12

2. Red‐emitting 4‐methyl coumarin fused barbituric acid as an electrochemical sensor for catechol detection and probe for latent fingerprints;Luminescence;2024-07

3. Transport mechanism of presynaptic high-affinity choline uptake by CHT1;Nature Structural & Molecular Biology;2024-04

4. Generation of 3D molecules in pockets via a language model;Nature Machine Intelligence;2024-01-15

5. Analyzing the aromatic-aromatic interactions in proteins: A2ID 2.0;International Journal of Biological Macromolecules;2023-12