Benchmarking the Drude Polarizable Force Field Using the r(GACC) Tetranucleotide-Reference-Cited by-同舟云学术

Benchmarking the Drude Polarizable Force Field Using the r(GACC) Tetranucleotide

Published:2023-03-30 Issue:8 Volume:63 Page:2505-2511
ISSN:1549-9596
Container-title:Journal of Chemical Information and Modeling
language:en
Short-container-title:J. Chem. Inf. Model.

Author:

Winkler Lauren¹^ORCID,Cheatham Thomas E.¹^ORCID

Affiliation:

1. Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 306, Salt Lake City, Utah 84112, United States

Funder

National Institute of General Medical Sciences

Publisher

American Chemical Society (ACS)

Subject

Library and Information Sciences,Computer Science Applications,General Chemical Engineering,General Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.3c00250

Reference37 articles.

1. Molecular dynamics simulation of nucleic acids: Successes, limitations, and promise

2. Convergence and reproducibility in molecular dynamics simulations of the DNA duplex d(GCACGAACGAACGAACGC)

3. Highly sampled tetranucleotide and tetraloop motifs enable evaluation of common RNA force fields

4. RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview

5. Efficient Simulation Method for Polarizable Protein Force Fields: Application to the Simulation of BPTI in Liquid Water

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