Detecting Proline and Non-Proline Cis Isomers in Protein Structures from Sequences Using Deep Residual Ensemble Learning-Reference-Cited by-同舟云学术

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Detecting Proline and Non-Proline Cis Isomers in Protein Structures from Sequences Using Deep Residual Ensemble Learning

Published:2018-08-17 Issue:9 Volume:58 Page:2033-2042
ISSN:1549-9596
Container-title:Journal of Chemical Information and Modeling
language:en
Short-container-title:J. Chem. Inf. Model.

Author:

Singh Jaswinder¹,Hanson Jack¹^ORCID,Heffernan Rhys¹,Paliwal Kuldip¹,Yang Yuedong²³,Zhou Yaoqi²^ORCID

Affiliation:

1. Signal Processing Laboratory, Griffith University, Brisbane, QLD 4122, Australia

2. Institute for Glycomics and School of Information and Communication Technology, Griffith University, Southport, QLD 4222, Australia

3. School of Data and Computer Science, Sun Yat-Sen University, Guangzhou, Guangdong 510006, China

Funder

National Health and Medical Research Council

Australian Research Council

Publisher

American Chemical Society (ACS)

Subject

Library and Information Sciences,Computer Science Applications,General Chemical Engineering,General Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jcim.8b00442

Reference57 articles.

1. Non-proline Cis peptide bonds in proteins

2. Cis–trans isomerization of omega dihedrals in proteins

3. Two non-prolinecispeptide bonds may be important for factor XIII function

4. Structure of H/ACA RNP Protein Nhp2p Reveals Cis/Trans Isomerization of a Conserved Proline at the RNA and Nop10 Binding Interface

5. Structural insights into the catalytic mechanism of a family 18 exo-chitinase

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2. Deep Ensemble Learning with Atrous Spatial Pyramid Networks for Protein Secondary Structure Prediction;Biomolecules;2022-06-02

3. SPOT-1D2: Improving Protein Secondary Structure Prediction using High Sequence Identity Training Set and an Ensemble of Recurrent and Residual-convolutional Neural Networks;2021 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB);2021-10-13

4. RNA Backbone Torsion and Pseudotorsion Angle Prediction Using Dilated Convolutional Neural Networks;Journal of Chemical Information and Modeling;2021-05-26

5. Secondary Structures of Proteins: A Comparison of Models and Experimental Results;Journal of Proteome Research;2021-02-23

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