Stacking Effects on Local Structure in RNA: Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs Are Replaced by isoG−isoC Pairs-Reference-Cited by-同舟云学术

Stacking Effects on Local Structure in RNA: Changes in the Structure of Tandem GA Pairs when Flanking GC Pairs Are Replaced by isoG−isoC Pairs

Published:2007-04-06 Issue:24 Volume:111 Page:6718-6727
ISSN:1520-6106
Container-title:The Journal of Physical Chemistry B
language:en
Short-container-title:J. Phys. Chem. B

Author:

Chen Gang¹,Kierzek Ryszard¹,Yildirim Ilyas¹,Krugh Thomas R.¹,Turner Douglas H.¹,Kennedy Scott D.¹

Affiliation:

1. Departments of Chemistry and Physics, University of Rochester, Rochester, New York 14627, Center for Pediatric Biomedical Research and Departments of Pediatrics and Biochemistry and Biophysics, School of Medicine and Dentistry, University of Rochester, Rochester, New York 14642, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 60-714 Poznan, Noskowskiego 12/14, Poland

Publisher

American Chemical Society (ACS)

Subject

Materials Chemistry,Surfaces, Coatings and Films,Physical and Theoretical Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/jp068732m

Reference72 articles.

1. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

2. Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

3. Effects of GA mismatches on the structure and thermodynamics of RNA internal loops

4. The Stability and Structure of Tandem GA Mismatches in RNA Depend on Closing Base Pairs

5. Thermodynamic Stabilities of Internal Loops with GU Closing Pairs in RNA

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