Analysis of Tandem Mass Spectrometry Data with CONGA: Combining Open and Narrow Searches with Group-Wise Analysis-Reference-Cited by-同舟云学术

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Analysis of Tandem Mass Spectrometry Data with CONGA: Combining Open and Narrow Searches with Group-Wise Analysis

Published:2024-04-23 Issue:6 Volume:23 Page:1894-1906
ISSN:1535-3893
Container-title:Journal of Proteome Research
language:en
Short-container-title:J. Proteome Res.

Author:

Freestone Jack¹,Noble William S.²³^ORCID,Keich Uri¹^ORCID

Affiliation:

1. School of Mathematics and Statistics F07, University of Sydney, NSW 2006, Australia

2. Department of Genome Sciences, University of Washington, Seattle, Washington 98195, United States

3. Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, Washington 98195, United States

Publisher

American Chemical Society (ACS)

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.3c00399

Reference24 articles.

1. A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides

2. MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics

3. Re-investigating the correctness of decoy-based false discovery rate control in proteomics tandem mass spectrometry

4. Semi-supervised learning for peptide identification from shotgun proteomics datasets

5. Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search

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