MS<sup>2</sup>Rescore 3.0 Is a Modular, Flexible, and User-Friendly Platform to Boost Peptide Identifications, as Showcased with MS Amanda 3.0-Reference-Cited by-同舟云学术

MS²Rescore 3.0 Is a Modular, Flexible, and User-Friendly Platform to Boost Peptide Identifications, as Showcased with MS Amanda 3.0

Published:2024-03-16 Issue:8 Volume:23 Page:3200-3207
ISSN:1535-3893
Container-title:Journal of Proteome Research
language:en
Short-container-title:J. Proteome Res.

Author:

Buur Louise M.¹^ORCID,Declercq Arthur²³^ORCID,Strobl Marina¹,Bouwmeester Robbin²³^ORCID,Degroeve Sven²³^ORCID,Martens Lennart²³^ORCID,Dorfer Viktoria¹^ORCID,Gabriels Ralf²³^ORCID

Affiliation:

1. Bioinformatics Research Group, University of Applied Sciences Upper Austria, Hagenberg 4232, Austria

2. VIB-UGent Center for Medical Biotechnology, VIB, Ghent 9052, Belgium

3. Department of Biomolecular Medicine, Ghent University, Ghent 9052, Belgium

Funder

HORIZON EUROPE Marie Sklodowska-Curie Actions

Universiteit Gent

HORIZON EUROPE Framework Programme

Fonds Wetenschappelijk Onderzoek

HORIZON EUROPE Research Infrastructures

Publisher

American Chemical Society (ACS)

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.3c00785

Reference39 articles.

1. Anatomy and evolution of database search engines—a central component of mass spectrometry based proteomic workflows

2. A Face in the Crowd: Recognizing Peptides Through Database Search

3. Semi-supervised learning for peptide identification from shotgun proteomics datasets

4. Assigning Significance to Peptides Identified by Tandem Mass Spectrometry Using Decoy Databases

5. Accurate peptide fragmentation predictions allow data driven approaches to replace and improve upon proteomics search engine scoring functions

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