nf-encyclopedia: A Cloud-Ready Pipeline for Chromatogram Library Data-Independent Acquisition Proteomics Workflows-Reference-Cited by-同舟云学术

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nf-encyclopedia: A Cloud-Ready Pipeline for Chromatogram Library Data-Independent Acquisition Proteomics Workflows

Published:2023-07-07 Issue:8 Volume:22 Page:2743-2749
ISSN:1535-3893
Container-title:Journal of Proteome Research
language:en
Short-container-title:J. Proteome Res.

Author:

Allen Carolyn¹,Meinl Rico¹,Paez J. Sebastian¹,Searle Brian C.²³⁴,Just Seth⁴^ORCID,Pino Lindsay K.¹^ORCID,Fondrie William E.¹^ORCID

Affiliation:

1. Talus Bioscience, Seattle, Washington 98122, United States

2. Department of Biomedical Informatics, The Ohio State University, Columbus, Ohio 43210, United States

3. Pelotonia Institute for Immuno-Oncology, The Ohio State University Comprehensive Cancer Center, Columbus, Ohio 43210, United States

4. Proteome Software, Inc., Portland, Oregon 97219, United States

Funder

National Science Foundation

Publisher

American Chemical Society (ACS)

Subject

General Chemistry,Biochemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.2c00613

Reference40 articles.

1. Data-controlled automation of liquid chromatography/tandem mass spectrometry analysis of peptide mixtures

2. Review, Evaluation, and Discussion of the Challenges of Missing Value Imputation for Mass Spectrometry-Based Label-Free Global Proteomics

3. Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

4. Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

5. A multicenter study benchmarks software tools for label-free proteome quantification

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Cloud-enabled Scalable Analysis of Large Proteomics Cohorts;2024-09-10

2. Analysis of DIA proteomics data using MSFragger-DIA and FragPipe computational platform;Nature Communications;2023-07-12

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