Analysis and Visualization of Quantitative Proteomics Data Using FragPipe-Analyst-Reference-Cited by-同舟云学术

Analysis and Visualization of Quantitative Proteomics Data Using FragPipe-Analyst

Published:2024-09-10 Issue: Volume: Page:
ISSN:1535-3893
Container-title:Journal of Proteome Research
language:en
Short-container-title:J. Proteome Res.

Author:

Hsiao Yi¹,Zhang Haijian²,Li Ginny Xiaohe³,Deng Yamei³,Yu Fengchao³^ORCID,Valipour Kahrood Hossein²⁴,Steele Joel R.²^ORCID,Schittenhelm Ralf B.²^ORCID,Nesvizhskii Alexey I.¹³^ORCID

Affiliation:

1. Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan 48109, United States

2. Monash Proteomics & Metabolomics Platform, Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia

3. Department of Pathology, University of Michigan, Ann Arbor, Michigan 48109, United States

4. Monash Genomics & Bioinformatics Platform, Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia

Funder

Bioplatforms Australia

National Institutes of Health

Publisher

American Chemical Society (ACS)

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.4c00294

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1. IonQuant Enables Accurate and Sensitive Label-Free Quantification With FDR-Controlled Match-Between-Runs

2. Quantitative proteomic landscape of metaplastic breast carcinoma pathological subtypes and their relationship to triple-negative tumors

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4. Analysis of DIA proteomics data using MSFragger-DIA and FragPipe computational platform

5. Proteome-wide identification of ubiquitin interactions using UbIA-MS