pClean: An Algorithm To Preprocess High-Resolution Tandem Mass Spectra for Database Searching-Reference-Cited by-同舟云学术

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pClean: An Algorithm To Preprocess High-Resolution Tandem Mass Spectra for Database Searching

Published:2019-07-31 Issue:9 Volume:18 Page:3235-3244
ISSN:1535-3893
Container-title:Journal of Proteome Research
language:en
Short-container-title:J. Proteome Res.

Author:

Deng Yamei¹²³^ORCID,Ren Zhe³⁴,Pan Qingfei¹²³,Qi Da³⁴,Wen Bo,Ren Yan³⁴^ORCID,Yang Huanming³⁴⁵,Wu Lin¹,Chen Fei¹,Liu Siqi¹³⁴^ORCID

Affiliation:

1. CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China

2. University of the Chinese Academy of Sciences, Beijing 100049, China

3. BGI-Shenzhen, Shenzhen 518083, China

4. China National GeneBank, BGI-Shenzhen, Shenzhen 518120, China

5. James D. Watson Institute of Genome Sciences, Hangzhou 310058, China

Funder

Ministry of Science and Technology of the People's Republic of China

National Natural Science Foundation of China

Publisher

American Chemical Society (ACS)

Subject

General Chemistry,Biochemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jproteome.9b00141

Reference38 articles.

1. Mass spectrometry-based proteomics

2. Probability-based protein identification by searching sequence databases using mass spectrometry data

3. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

4. A Method for Assessing the Statistical Significance of Mass Spectrometry-Based Protein Identifications Using General Scoring Schemes

5. MS Amanda, a Universal Identification Algorithm Optimized for High Accuracy Tandem Mass Spectra

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1. Inferring early-life host and microbiome functions by mass spectrometry-based metaproteomics and metabolomics;Computational and Structural Biotechnology Journal;2022

2. High-Performance Computing Strategy Using Distributed-Memory Supercomputers;Computational Biology;2022

3. High performance computing framework for tera-scale database search of mass spectrometry data;Nature Computational Science;2021-08

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