Energy Matrix of Structurally Important Side-Chain/Side-Chain Interactions in Proteins-Reference-Cited by-同舟云学术

Energy Matrix of Structurally Important Side-Chain/Side-Chain Interactions in Proteins

Published:2010-05-28 Issue:7 Volume:6 Page:2191-2203
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Berka Karel¹,Laskowski Roman A.¹,Hobza Pavel¹,Vondrášek Jiří¹

Affiliation:

1. Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, Flemingovo nám. 2, Prague, Czech Republic, Institute of Biotechnology, Academy of Sciences of the Czech Republic, Videnska 1083, 142 00 Prague, Czech Republic, Palacký University, Department of Physical Chemistry, Faculty of Science, tø. 17. listopadu 12, 771 46, Olomouc, Czech Republic, and EMBL Outstation - Hinxton, European Bioinformatics Institute,...

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/ct100007y

Reference35 articles.

1. Intrinsically unstructured proteins and their functions

2. Principles that Govern the Folding of Protein Chains

3. A new substitution matrix for protein sequence searches based on contact frequencies in protein structures

4. Residue – Residue Potentials with a Favorable Contact Pair Term and an Unfavorable High Packing Density Term, for Simulation and Threading

5. An empirical energy potential with a reference state for protein fold and sequence recognition

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