Revision of AMBER Torsional Parameters for RNA Improves Free Energy Predictions for Tetramer Duplexes with GC and iGiC Base Pairs-Reference-Cited by-同舟云学术

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Revision of AMBER Torsional Parameters for RNA Improves Free Energy Predictions for Tetramer Duplexes with GC and iGiC Base Pairs

Published:2011-12-23 Issue:1 Volume:8 Page:172-181
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Yildirim Ilyas¹,Kennedy Scott D.²,Stern Harry A.¹,Hart James M.¹,Kierzek Ryszard³,Turner Douglas H.¹

Affiliation:

1. Department of Chemistry, University of Rochester, Rochester, New York 14627, United States

2. Department of Biochemistry and Biophysics, School of Medicine and Dentistry, University of Rochester, Rochester, New York 14642, United States

3. Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 12/14, 60-714 Poznan, Poland

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/ct200557r

Reference48 articles.

1. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

2. Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena

3. The Structural Basis of Ribosome Activity in Peptide Bond Synthesis

4. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

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5. Synthesis, NMR kinetics and dynamic structure of a 17-mer heptaloop RNA hairpin carrying a 3-N-methyluridine nucleotide residue in the loop region;Journal of Biomolecular Structure and Dynamics;2023-06-06

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