What Markov State Models Can and Cannot Do: Correlation versus Path-Based Observables in Protein-Folding Models

Author:

Suárez Ernesto1ORCID,Wiewiora Rafal P.2,Wehmeyer Chris3,Noé Frank3,Chodera John D.2ORCID,Zuckerman Daniel M.4ORCID

Affiliation:

1. Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research, Frederick, Maryland 21702, United States

2. Computational and Systems Biology Program, Memorial Sloan Kettering Cancer Center, Sloan Kettering Institute, New York, New York 10065, United States

3. Freie Universität Berlin, 14195 Berlin, Germany

4. Department of Biomedical Engineering, Oregon Health and Science University, Portland, Oregon 97239, United States

Funder

National Cancer Institute

Division of Molecular and Cellular Biosciences

U.S. Department of Defense

National Institutes of Health

H2020 European Research Council

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Reference88 articles.

1. ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale

2. OpenMM: A Hardware-Independent Framework for Molecular Simulations

3. GPU-accelerated molecular modeling coming of age

4. Anderson, J. A.; Glotzer, S. C. The development and expansion of HOOMD-blue through six years of GPU proliferation. arXiv, 2013, 1308.5587, ver. 1. https://arxiv.org/abs/1308.5587v1.

5. Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号  京ICP备18003416号-3