Optimal Coarse-Grained Site Selection in Elastic Network Models of Biomolecules-Reference-Cited by-同舟云学术

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Optimal Coarse-Grained Site Selection in Elastic Network Models of Biomolecules

Published:2018-12-04 Issue:1 Volume:15 Page:648-664
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Diggins Patrick¹,Liu Changjiang¹²,Deserno Markus¹,Potestio Raffaello³⁴^ORCID

Affiliation:

1. Department of Physics, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States

2. Department of Biophysics, University of Michigan, Ann Arbor, Michigan 48109, United States

3. Physics Department, University of Trento, via Sommarive, 14 I-38123 Trento, Italy

4. INFN-TIFPA, Trento Institute for Fundamental Physics and Applications, I-38123 Trento, Italy

Funder

Division of Chemistry

H2020 European Research Council

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

http://pubs.acs.org/doi/pdf/10.1021/acs.jctc.8b00654

Reference80 articles.

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2. Computer simulation of protein folding

3. Shaw, D. E.; Dror, R. O.; Salmon, J. K.; Grossman, J. P.; Mackenzie, K. M.; Bank, J. A.; Young, C.; Deneroff, M. M.; Batson, B.; Bowers, K. J.; Chow, E.; Eastwood, M. P.; Ierardi, D. J.; Klepeis, J. L.; Kuskin, J. S.; Larson, R. H.; Lindorff-Larsen, K.; Maragakis, P.; Moraes, M. A.; Piana, S.; Shan, Y.; Towles, B. Millisecond-scale Molecular Dynamics Simulations on Anton. Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis; New York, NY, 2009; pp 65:1–65:11.

4. Protein folding kinetics and thermodynamics from atomistic simulation

5. Atomic-level description of ubiquitin folding

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