Virtual Double-System Single-Box: A Nonequilibrium Alchemical Technique for Absolute Binding Free Energy Calculations: Application to Ligands of the SARS-CoV-2 Main Protease

Author:

Macchiagodena Marina1,Pagliai Marco1ORCID,Karrenbrock Maurice1,Guarnieri Guido2,Iannone Francesco2,Procacci Piero1ORCID

Affiliation:

1. Dipartimento di Chimica “Ugo Schiff”, Università degli Studi di Firenze, Via della Lastruccia 3, 50019 Sesto Fiorentino, Italy

2. ENEA, Portici Research Centre, DTE-ICT-HPC P.le E. Fermi, 1, I-80055 Portici (NA), Italy

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Reference84 articles.

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2. Osipiuk, J.; Jedrzejczak, R.; Tesar, C.; Endres, M.; Stols, L.; Babnigg, G.; Kim, Y.; Michalska, K.; Joachimiak, A. The Crystal Structure of Papain-Like Protease of SARS CoV-2, RSCB PDB, 2020; pdbode: 6W9C, 2020.

3. Crowdsourcing drug discovery for pandemics

4. From SARS to MERS: crystallographic studies on coronaviral proteases enable antiviral drug design

5. Crystal structure of SARS-CoV-2 main protease provides a basis for design of improved α-ketoamide inhibitors

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