Assessing SIRAH’s Capability to Simulate Intrinsically Disordered Proteins and Peptides-Reference-Cited by-同舟云学术

Assessing SIRAH’s Capability to Simulate Intrinsically Disordered Proteins and Peptides

Published:2021-01-07 Issue:2 Volume:17 Page:599-604
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Klein Florencia¹²,Barrera Exequiel E.¹³^ORCID,Pantano Sergio¹⁴^ORCID

Affiliation:

1. Institut Pasteur de Montevideo, Mataojo 2020, Montevideo, CP 11400, Uruguay

2. Graduate Program in Chemistry, Facultad de Química, Universidad de la República, Montevideo 11800, Uruguay

3. Instituto de Histología y Embriología (IHEM) - Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), CC56, Universidad Nacional de Cuyo (UNCuyo), M5500 Mendoza, Argentina

4. Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai 201210, China

Funder

Agencia Nacional de Investigaci?n e Innovaci?n

FOCEM

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jctc.0c00948

Reference47 articles.

1. Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm

2. Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life

3. Intrinsically unstructured proteins and their functions

4. Intrinsically disordered proteins may escape unwanted interactions via functional misfolding

5. pH-Dependent Aggregation in Intrinsically Disordered Proteins Is Determined by Charge and Lipophilicity

Cited by 22 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. A Practical Guide to All-Atom and Coarse-Grained Molecular Dynamics Simulations Using Amber and Gromacs: A Case Study of Disulfide-Bond Impact on the Intrinsically Disordered Amyloid Beta;International Journal of Molecular Sciences;2024-06-18

2. SIRAH Late Harvest: Coarse-Grained Models for Protein Glycosylation;Journal of Chemical Theory and Computation;2024-01-04

3. “Boundary residues” between the folded RNA recognition motif and disordered RGG domains are critical for FUS–RNA binding;Journal of Biological Chemistry;2023-12

4. PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins;Nucleic Acids Research;2023-10-30

5. Protocols for Multi-Scale Molecular Dynamics Simulations: A Comparative Study for Intrinsically Disordered Amyloid Beta in Amber & Gromacs on CPU & GPU;2023-10-24