Estimation of Relative Protein–RNA Binding Strengths from Fluctuations in the Bound State-Reference-Cited by-同舟云学术

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Estimation of Relative Protein–RNA Binding Strengths from Fluctuations in the Bound State

Published:2016-09-01 Issue:9 Volume:12 Page:4593-4599
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Ghaemi Zhaleh¹,Guzman Irisbel¹,Baek Jung-un Julia¹,Gruebele Martin¹,Luthey-Schulten Zaida¹

Affiliation:

1. Department of Chemistry, ‡Department of Biochemistry, ¶Department of Physics, §Center for the Physics of Living Cells, and ∥Center for Biophysics and Quantitative Biology, University of Illinois at Urbana−Champaign, Urbana, Illinois 61801, United States

Funder

Division of Molecular and Cellular Biosciences

Division of Graduate Education

National Institutes of Health

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jctc.6b00418

Reference47 articles.

1. A Guide to Simple and Informative Binding Assays

2. Quantitative Analysis of Protein-RNA Interactions by Gel Mobility Shift

3. Molecular determinants of drug–receptor binding kinetics

4. Frenkel, D.; Smit, B.InUnderstanding Molecular Simulation,2nd ed.Frenkel, D.; Smit, B., Eds.Academic Press:San Diego, 2002; pp23–107.

5. Microsecond folding experiments and simulations: a match is made

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1. Spliceosomal SL1 RNA binding to U1-70K: the role of the extended RRM;Nucleic Acids Research;2022-07-25

2. Cellular Sticking Can Strongly Reduce Complex Binding by Speeding Dissociation;The Journal of Physical Chemistry B;2021-04-07

3. Molecular Mechanism for the Role of the H2A and H2B Histone Tails in Nucleosome Repositioning;The Journal of Physical Chemistry B;2018-11-27

4. Role of Electrostatics in Protein–RNA Binding: The Global vs the Local Energy Landscape;The Journal of Physical Chemistry B;2017-08-31

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