Feasibility of MinION Nanopore Rapid Sequencing in the Detection of Common Diarrhea Pathogens in Fecal Specimen-Reference-Cited by-同舟云学术

Feasibility of MinION Nanopore Rapid Sequencing in the Detection of Common Diarrhea Pathogens in Fecal Specimen

Published:2022-11-22 Issue:48 Volume:94 Page:16658-16666
ISSN:0003-2700
Container-title:Analytical Chemistry
language:en
Short-container-title:Anal. Chem.

Author:

Khan Md Anik Ashfaq¹²,Ghosh Prakash¹,Chowdhury Rajashree¹,Hossain Faria¹,Mahmud Araf³,Faruque Abu S. G.¹,Ahmed Tahmeed¹,Abd El Wahed Ahmed¹^ORCID,Mondal Dinesh¹³

Affiliation:

1. Nutrition and Clinical Services Division, International Centre for Diarrheal Disease Research, Bangladesh, Dhaka-1212, Bangladesh

2. Institute of Animal Hygiene and Veterinary Public Health, University of Leipzig, An den Tierkliniken 1, 04103Leipzig, Germany

3. Laboratory Sciences and Services Division, International Centre for Diarrheal Disease Research, Bangladesh, Dhaka-1212, Bangladesh

Funder

Styrelsen f?r Internationellt Utvecklingssamarbete

Publisher

American Chemical Society (ACS)

Subject

Analytical Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.analchem.2c02771

Reference28 articles.

1. IEDCR Outbreak investigations in Bangladesh: 2007-present. https://iedcr.gov.bd/outbreak (date of access: 21 April 2022).

2. Determinants of severe dehydration from diarrheal disease at hospital presentation: Evidence from 22 years of admissions in Bangladesh

3. Outbreak Investigation Using High-Throughput Genome Sequencing within a Diagnostic Microbiology Laboratory

4. Whole-Genome Sequencing in Outbreak Analysis

5. Real time application of whole genome sequencing for outbreak investigation – What is an achievable turnaround time?

Cited by 5 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Nanopore R10.4 metagenomic detection of blaCTX-M/blaDHA antimicrobial resistance genes and their genetic environments in stool;Nature Communications;2024-08-28

2. Nanopore sequencing from protozoa to phages: decoding biological information on a string of biochemical molecules into human-readable signals;2024-08-07

3. Fast detection of bacterial gut pathogens on miniaturized devices: an overview;Expert Review of Molecular Diagnostics;2024-02-13

4. Virotyping and genetic antimicrobial susceptibility testing of porcine ETEC/STEC strains and associated plasmid types;Frontiers in Microbiology;2023-04-17

5. Advances in miniaturized nanosensing platforms for analysis of pathogenic bacteria and viruses;Lab on a Chip;2023