Mapping All-Atom Models onto One-Bead Coarse-Grained Models: General Properties and Applications to a Minimal Polypeptide Model-Reference-Cited by-同舟云学术

Mapping All-Atom Models onto One-Bead Coarse-Grained Models: General Properties and Applications to a Minimal Polypeptide Model

Published:2006-04-18 Issue:3 Volume:2 Page:667-673
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Tozzini Valentina¹,Rocchia Walter²,McCammon J. Andrew³

Affiliation:

1. NEST − Scuola Normale Superiore, Piazza dei Cavalieri, 7 I-56126 Pisa, Italy

2. Scuola Normale Superiore, Piazza dei Cavalieri, 7 I-56126 Pisa, Italy

3. Department of Chemistry and Biochemistry, Center for Theoretical Biological Physics, Howard Hughes Medical Institute, Department of Pharmacology, University of California at San Diego, La Jolla, California 92093

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/ct050294k

Reference24 articles.

1. Coarse-grained models for proteins

2. Molecular dynamics simulations of spontaneous fibril formation by random-coil peptides

Cited by 65 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Refined Bonded Terms in Coarse-Grained Models for Intrinsically Disordered Proteins Improve Backbone Conformations;The Journal of Physical Chemistry B;2024-07-01

2. Coiled-coil domains are sufficient to drive liquid-liquid phase separation in protein models;Biophysical Journal;2024-03

3. Protocol for the development of coarse-grained structures for macromolecular simulation using GROMACS;PLOS ONE;2023-08-03

4. Coiled-coil domains are sufficient to drive liquid-liquid phase separation of proteins in molecular models;2023-06-03

5. Coarse-Grain Modelling Strategies;Computer Simulations in Molecular Biology;2023