On the Sensitivity of Peptide Nucleic Acid Duplex Formation and Crystal Dissolution to a Variation of Force-Field Parameters-Reference-Cited by-同舟云学术

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On the Sensitivity of Peptide Nucleic Acid Duplex Formation and Crystal Dissolution to a Variation of Force-Field Parameters

Published:2013-11-20 Issue:1 Volume:10 Page:391-400
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Bachmann Stephan J.¹,Lin Zhixiong¹,Stafforst Thorsten²,van Gunsteren Wilfred F.¹,Dolenc Jožica¹³

Affiliation:

1. Laboratory of Physical Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland

2. Laboratory of Organic Chemistry, ETH Zürich, CH-8093 Zürich, Switzerland

3. Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/ct400652w

Reference40 articles.

1. Molecular dynamics simulation of nucleic acids: Successes, limitations, and promise

2. Simulation and modeling of nucleic acid structure, dynamics and interactions

3. Recent advances in the study of nucleic acid flexibility by molecular dynamics

4. Frontiers in Molecular Dynamics Simulations of DNA

5. Influence of Artificial Periodicity and Ionic Strength in Molecular Dynamics Simulations of Charged Biomolecules Employing Lattice-Sum Methods

Cited by 3 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Parameterization of the miniPEG-Modified γPNA Backbone: Toward Induced γPNA Duplex Dissociation;Journal of Chemical Theory and Computation;2023-05-17

2. Improved Force Fields for Peptide Nucleic Acids with Optimized Backbone Torsion Parameters;Journal of Chemical Theory and Computation;2018-05-23

3. Evaluation of the Amber Force Fields for Molecular Dynamics Simulation of a PNA-DNA Duplex;Bulletin of the Korean Chemical Society;2017-10-20

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