Toward Consistent Physics-Based Modeling of Local Backbone Structures and Chirality Change of Proteins in Coarse-Grained Approaches-Reference-Cited by-同舟云学术

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Toward Consistent Physics-Based Modeling of Local Backbone Structures and Chirality Change of Proteins in Coarse-Grained Approaches

Published:2023-10-27 Issue:44 Volume:14 Page:9824-9833
ISSN:1948-7185
Container-title:The Journal of Physical Chemistry Letters
language:en
Short-container-title:J. Phys. Chem. Lett.

Author:

Lipska Agnieszka G.¹^ORCID,Sieradzan Adam K.¹²^ORCID,Atmaca Sümeyye³,Czaplewski Cezary¹²^ORCID,Liwo Adam¹²^ORCID

Affiliation:

1. Centre of Informatics Tri-city Academic Supercomputer and Network (CI TASK), Gdańsk University of Technology, Fahrenheit Union of Universities in Gdańsk, ul. G. Narutowicza 11/12, 80-233 Gdańsk, Poland

2. Faculty of Chemistry, University of Gdańsk, Fahrenheit Union of Universities, ul. Wita Stwosza 63, 80-308 Gdańsk, Poland

3. Kocaeli University, Institute of Science, Umuttepe Yerleşkesi, 41001 İzmit/Kocaeli̇, Türkiye

Funder

Narodowe Centrum Nauki

Publisher

American Chemical Society (ACS)

Subject

General Materials Science,Physical and Theoretical Chemistry

Link

https://pubs.acs.org/doi/pdf/10.1021/acs.jpclett.3c01988

Reference53 articles.

1. Dominant forces in protein folding

2. Geometry and symmetry presculpt the free-energy landscape of proteins

3. A new force field for molecular mechanical simulation of nucleic acids and proteins

4. An all atom force field for simulations of proteins and nucleic acids

5. Energy parameters in polypeptides. 10. Improved geometrical parameters and nonbonded interactions for use in the ECEPP/3 algorithm, with application to proline-containing peptides

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