A Coarse-Grained Model of Unstructured Single-Stranded DNA Derived from Atomistic Simulation and Single-Molecule Experiment-Reference-Cited by-同舟云学术

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A Coarse-Grained Model of Unstructured Single-Stranded DNA Derived from Atomistic Simulation and Single-Molecule Experiment

Published:2014-06-09 Issue:8 Volume:10 Page:2891-2896
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Maffeo Christopher¹,Ngo Thuy T. M.²,Ha Taekjip¹³,Aksimentiev Aleksei¹⁴

Affiliation:

1. Department of Physics, University of Illinois at Urbana−Champaign, Urbana, Illinois, United States

2. Center for Biophysics and Computational Biology, University of Illinois at Urbana−Champaign, Urbana, Illinois, United States

3. The Howard Hughes Medical Institute, Chevy Chase, Maryland, United States

4. Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana−Champaign, Urbana, Illinois, United States

Funder

National Science Foundation

National Institutes of Health

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/ct500193u

Reference51 articles.

1. Sequence-dependent collective properties of DNAs and their role in biological systems

2. Chromatin structure outside and inside the nucleus

3. Dynamic DNA nanotechnology using strand-displacement reactions

4. Mechanisms of single-stranded DNA-binding protein functioning in cellular DNA metabolism

5. THE DNA REPLICATION FORK IN EUKARYOTIC CELLS

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1. Simulating the Lyotropic Phase Behavior of a Partially Self-Complementary DNA Tetramer;Biomacromolecules;2024-06-03

2. CGeNArate: a sequence-dependent coarse-grained model of DNA for accurate atomistic MD simulations of kb-long duplexes;Nucleic Acids Research;2024-05-30

3. ANNaMo: Coarse-grained modeling for folding and assembly of RNA and DNA systems;The Journal of Chemical Physics;2024-05-28

4. Dependence of nucleosome mechanical stability on DNA mismatches;eLife;2024-04-24

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