CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work-Reference-Cited by-同舟云学术

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CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work

Published:2011-05-19 Issue:6 Volume:7 Page:1979-1989
ISSN:1549-9618
Container-title:Journal of Chemical Theory and Computation
language:en
Short-container-title:J. Chem. Theory Comput.

Author:

Kenzaki Hiroo¹,Koga Nobuyasu¹,Hori Naoto¹,Kanada Ryo¹,Li Wenfei¹²,Okazaki Kei-ichi³,Yao Xin-Qiu¹,Takada Shoji¹⁴

Affiliation:

1. Department of Biophysics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan

2. Department of Physics, Nanjing University, Nanjing 210093, China

3. Department of Physics, School of Advanced Science and Engineering, Waseda University, Tokyo 169-8555, Japan

4. Advanced Center for Computing and Communication, RIKEN, Wako Saitama 351-0198, Japan

Publisher

American Chemical Society (ACS)

Subject

Physical and Theoretical Chemistry,Computer Science Applications

Link

https://pubs.acs.org/doi/pdf/10.1021/ct2001045

Reference65 articles.

1. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

2. AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules

3. Scalable molecular dynamics with NAMD

4. GROMACS 3.0: a package for molecular simulation and trajectory analysis

5. A Multiscale Coarse-Graining Method for Biomolecular Systems

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