Sequence-Dependent Conformational Energy of DNA Derived from Molecular Dynamics Simulations: Toward Understanding the Indirect Readout Mechanism in Protein−DNA Recognition-Reference-Cited by-同舟云学术

Sequence-Dependent Conformational Energy of DNA Derived from Molecular Dynamics Simulations: Toward Understanding the Indirect Readout Mechanism in Protein−DNA Recognition

Published:2005-10-29 Issue:46 Volume:127 Page:16074-16089
ISSN:0002-7863
Container-title:Journal of the American Chemical Society
language:en
Short-container-title:J. Am. Chem. Soc.

Author:

Araúzo-Bravo Marcos J.¹,Fujii Satoshi¹,Kono Hidetoshi¹,Ahmad Shandar¹,Sarai Akinori¹

Affiliation:

1. Contribution from the Department of Biosciences and Bioinformatics, Kyushu Institute of Technology, Iizuka, Fukuoka, 820-8502, Japan, Department of Chemistry and Biochemistry, Kyushu University, Fukuoka, Japan, Neutron Research Center and Center for Promotion of Computational Science and Engineering, Japan Atomic Energy Research Institute, 8-1, Umemidai, Soraku-gun, Kyoto, 619-0215, Japan, PRESTO, Japan Science and Technology Agency, and Advanced Technology Institute, Shiki, Saitama, Japan

Publisher

American Chemical Society (ACS)

Subject

Colloid and Surface Chemistry,Biochemistry,General Chemistry,Catalysis

Link

https://pubs.acs.org/doi/pdf/10.1021/ja053241l

Reference43 articles.

1. Structure-based prediction of DNA target sites by regulatory proteins

2. The DNA Helix and How it is Read

3. DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

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