Dynamical landscapes of cell fate decisions

Author:

Sáez M.12ORCID,Briscoe J.1ORCID,Rand D. A.34

Affiliation:

1. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK

2. IQS, Universitat Ramon Llull, Via Augusta 390, Barcelona 08017, Spain

3. Mathematics Institute, University of Warwick, Coventry CV4 7AL, UK

4. Zeeman Institute for Systems Biology and Infectious Epidemiology Research, University of Warwick, Coventry CV4 7AL, UK

Abstract

The generation of cellular diversity during development involves differentiating cells transitioning between discrete cell states. In the 1940s, the developmental biologist Conrad Waddington introduced a landscape metaphor to describe this process. The developmental path of a cell was pictured as a ball rolling through a terrain of branching valleys with cell fate decisions represented by the branch points at which the ball decides between one of two available valleys. Here we discuss progress in constructing quantitative dynamical models inspired by this view of cellular differentiation. We describe a framework based on catastrophe theory and dynamical systems methods that provides the foundations for quantitative geometric models of cellular differentiation. These models can be fit to experimental data and used to make quantitative predictions about cellular differentiation. The theory indicates that cell fate decisions can be described by a small number of decision structures, such that there are only two distinct ways in which cells make a binary choice between one of two fates. We discuss the biological relevance of these mechanisms and suggest the approach is broadly applicable for the quantitative analysis of differentiation dynamics and for determining principles of developmental decisions.

Funder

Medical Research Council

Cancer Research UK

H2020 European Research Council

Wellcome Trust

Engineering and Physical Sciences Research Council

Publisher

The Royal Society

Subject

Biomedical Engineering,Biomaterials,Biochemistry,Bioengineering,Biophysics,Biotechnology

Reference62 articles.

1. Waddington C. 1957 The strategy of the genes. London, UK: Allen & Unwin.

2. Geometry of gene regulatory dynamics

3. Differentiable dynamical systems

4. Thom R. 1989 Structural stability and morphogenesis: an outline of a general theory of models. Boca Raton, FL: CRC Press.

5. Advanced Book Program;Zeeman EC,1977

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