Maximum mutational robustness in genotype–phenotype maps follows a self-similar blancmange-like curve

Author:

Mohanty Vaibhav123ORCID,Greenbury Sam F.45ORCID,Sarkany Tasmin6,Narayanan Shyam7,Dingle Kamaludin89,Ahnert Sebastian E.4105ORCID,Louis Ard A.1ORCID

Affiliation:

1. Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford, UK

2. Program in Health Sciences and Technology, Massachusetts Institute of Technology, Cambridge, MA, USA

3. MD-PhD Program, Harvard Medical School, Boston, MA, USA and Massachusetts Institute of Technology, Cambridge, MA, USA

4. Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, Cambridge, UK

5. The Alan Turing Institute, British Library, London, UK

6. Wellcome-MRC Cambridge Stem Cell Institute, University of Cambridge, Cambridge, UK

7. Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA, USA

8. Department of Mathematics and Natural Sciences, Centre for Applied Mathematics and Bioinformatics (CAMB), Gulf University of Science and Technology, Kuwait

9. Department of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA

10. Department of Chemical Engineering and Biotechnology, Cavendish Laboratory, University of Cambridge, Cambridge, UK

Abstract

Phenotype robustness, defined as the average mutational robustness of all the genotypes that map to a given phenotype, plays a key role in facilitating neutral exploration of novel phenotypic variation by an evolving population. By applying results from coding theory, we prove that the maximum phenotype robustness occurs when genotypes are organized as bricklayer’s graphs, so-called because they resemble the way in which a bricklayer would fill in a Hamming graph. The value of the maximal robustness is given by a fractal continuous everywhere but differentiable nowhere sums-of-digits function from number theory. Interestingly, genotype–phenotype maps for RNA secondary structure and the hydrophobic-polar (HP) model for protein folding can exhibit phenotype robustness that exactly attains this upper bound. By exploiting properties of the sums-of-digits function, we prove a lower bound on the deviation of the maximum robustness of phenotypes with multiple neutral components from the bricklayer’s graph bound, and show that RNA secondary structure phenotypes obey this bound. Finally, we show how robustness changes when phenotypes are coarse-grained and derive a formula and associated bounds for the transition probabilities between such phenotypes.

Funder

Engineering and Physical Sciences Research Council

National Science Foundation

Google

Royal Society

Marshall Aid Commemoration Commission

Gatsby Charitable Foundation

Simons Foundation

National Institute of General Medical Sciences

Publisher

The Royal Society

Subject

Biomedical Engineering,Biochemistry,Biomaterials,Bioengineering,Biophysics,Biotechnology

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